credentials

Credentials manager. Generates key pairs to be consumed by other utilities

credentials [-h] [--user USERID] [--host HOSTNAME]
            [--pubkey_path PUBKEY_PATH] [--nbits NBITS] --keys_path
            KEYS_PATH [--privkey_path PRIVKEY_PATH]
            command

Commands:

• create: Create key pair

• get_pubkey: Print Public key

• get_private: Print Private key

• host_install: Authorize key in remote host (requires authorized local keys)

• host_remove: Revert authorization on remote host (requires authorized local keys)

• host_check: Check authorization status on remote host. Operation: create|get_pubkey

optional arguments:

-h, --help                show this help message and exit
--user USERID             User id
--host HOSTNAME           Host name
--pubkey_path PUBKEY_PATH Public key file path
--nbits NBITS             Number of key bits
--keys_path KEYS_PATH     Credentials file path
--privkey_path PRIVKEY_PATH Private key file path
-v                        Output extra information

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scp_service

Simple sftp service

scp_service [-h] --keys_path KEYS_PATH [-i INPUT_FILE_PATH]
                   [-o OUTPUT_FILE_PATH]
                   command

commands

• get: Get remote file

• put: Put file to remote

• create: Create text file on remote

• file: Print remote text file

• listdir: List remote directory

optional arguments:

-h, --help            - Show this help message and exit  
--keys_path KEYS_PATH - Credentials file path  
-i INPUT_FILE_PATH    - Input file path | input string
-o OUTPUT_FILE_PATH   - Output file path

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ssh_command

Simple remote ssh command

ssh_command [-h] --keys_path KEYS_PATH [command [command ...]]

command               - Remote command

-h, --help            - show this help message and exit
--keys_path KEYS_PATH - Credentials file path

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slurm_test

Complete set of functions to manage slurm submissions remotely

slurm_test [-h] --keys_path KEYS_PATH [--script SCRIPT_PATH]
                  [--local_data LOCAL_DATA_PATH] [--remote REMOTE_PATH]
                  [--queue_settings Q_SETTINGS] [--module MODULE]
                  [--task_data TASK_FILE_PATH]
                  command

Command

• submit: Submit job

• queue: Check queue status

• cancel: Cancel submitted job

• status: Check job status

• get_data: Download remote files

• put_data: Upload local files to remote

• log: Get log files (stdout, stderr)

• get_file: Get single remote file

optional arguments:

-h, --help                      - show this help message and exit
--keys_path KEYS_PATH           - Credentials file path
--script LOCAL_RUN_SCRIPT       - Path to local script
--local_data LOCAL_DATA_PATH    - Local data bundle
--remote REMOTE_PATH            - Remote working dir
--queue_settings QUEUE_SETTINGS - Predefined queue settings
--modules MODULES               - Software modules to load
--task_data_file TASK_FILE_PATH - Store for task data
--overwrite                     - Overwrite data in output local directory
--task_file_type TASK_FILE_TYPE - Format for task data file (json, pickle). Default:json
--poll POLLING_INT              - Polling interval (seg), 0: No polling (default)
--remote_file REMOTE_FILE       - Remote file name to download (get_file)

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