Index

A

add_dir() (biobb_remote.task.DataBundle method)

add_file() (biobb_remote.task.DataBundle method)

B

biobb_remote.slurm module biobb_remote.ssh_credentials module

biobb_remote.ssh_session module biobb_remote.task module

C

cancel() (biobb_remote.task.Task method) check_host_auth() (biobb_remote.ssh_credentials.SSHCredentials method) check_job() (biobb_remote.task.Task method)

check_queue() (biobb_remote.task.Task method) clean_remote() (biobb_remote.task.Task method) close() (biobb_remote.ssh_session.SSHSession method)

D

DataBundle (class in biobb_remote.task)

G

generate_key() (biobb_remote.ssh_credentials.SSHCredentials method) get_file_names() (biobb_remote.task.DataBundle method) get_full_path() (biobb_remote.task.DataBundle method) get_logs() (biobb_remote.task.Task method) get_mtime() (biobb_remote.task.DataBundle method) get_output_data() (biobb_remote.task.Task method)

get_private_key() (biobb_remote.ssh_credentials.SSHCredentials method) get_public_key() (biobb_remote.ssh_credentials.SSHCredentials method) get_queue_info() (biobb_remote.task.Task method) get_remote_comm_line() (biobb_remote.task.Task method) get_remote_file() (biobb_remote.task.Task method) get_remote_file_stats() (biobb_remote.task.Task method) get_remote_py_script() (biobb_remote.task.Task method)

I

install_host_auth() (biobb_remote.ssh_credentials.SSHCredentials method)

is_active() (biobb_remote.ssh_session.SSHSession method)

L

load_data_from_file() (biobb_remote.task.Task method) load_from_file() (biobb_remote.ssh_credentials.SSHCredentials method)

load_from_private_key_file() (biobb_remote.ssh_credentials.SSHCredentials method) load_host_config() (biobb_remote.task.Task method)

M

module biobb_remote.slurm biobb_remote.ssh_credentials biobb_remote.ssh_session biobb_remote.task

P

prep_auto_settings() (biobb_remote.task.Task method)

prep_remote_workdir() (biobb_remote.task.Task method)

R

remove_host_auth() (biobb_remote.ssh_credentials.SSHCredentials method)

run_command() (biobb_remote.ssh_session.SSHSession method) run_sftp() (biobb_remote.ssh_session.SSHSession method)

S

save() (biobb_remote.ssh_credentials.SSHCredentials method) (biobb_remote.task.Task method) send_input_data() (biobb_remote.task.Task method) set_credentials() (biobb_remote.task.Task method) set_custom_settings() (biobb_remote.task.Task method)

set_local_data_bundle() (biobb_remote.task.Task method) set_private_key() (biobb_remote.task.Task method) Slurm (class in biobb_remote.slurm) SSHCredentials (class in biobb_remote.ssh_credentials) SSHSession (class in biobb_remote.ssh_session) submit() (biobb_remote.task.Task method)

T

Task (class in biobb_remote.task)

to_json() (biobb_remote.task.DataBundle method)